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Selected publications: Ali Torkamani, Ph.D.

Ectopic B-cell clusters that infiltrate transplanted human kidneys are clonal.Cheng J, Torkamani A, Grover RK, et. al. Proc Natl Acad Sci U S A. 108(14):5560-5. 2011 Apr 5. PMID: 21415360.

Statistical analysis strategies for association studies involving rare variants. Bansal V, Libiger O, Torkamani A, Schork NJ. Nat Rev Genet. 11(11):773-85. 2010 Nov. PMID: 20940738.

Coexpression network analysis of neural tissue reveals perturbations in developmental processes in schizophrenia. Torkamani A, Dean B, Schork NJ, Thomas EA. Genome Res. 20(4):403-412. 2010 Apr. PMID: 20197298.

Pathway and network analysis with high-density allelic association data. Torkamani A, Schork NJ. Methods Mol Biol. 563:289-301. 2009. PMID: 19597792.

Identification of rare cancer driver mutations by network reconstruction. Torkamani A, Schork NJ. Genome Res. 19(9):1570-78. 2009. PMID: 19574499.

Prestige centrality-based functional outlier detection in gene. Torkamani A, Schork NJ. Expression Analysis.25(17):2222-8. 2009 Sept 1. PMID: 19549629.

Pathway analysis of seven common diseases assessed by genome-wide association. Torkamani A, Topol EJ, Schork NJ. Genomics. 92(5):265-272. 2008. PMID: 18562267

Cancer driver mutations in protein kinase genes. Torkamani A, Verkhivker G, Schork NJ. Cancer Lett. 2008. 281(2):117-127. PMID: 19081671.

Identification of ALK as a major familial neuroblastoma predisposition gene. Mossé YP, Laudenslager M, Longo L, Cole KA, Wood A, Attiyeh EF, et al. Nature. 455(7215):930-935. 2008. PMID: 18724359.

Predicting functional regulatory polymorphisms. Torkamani A, Schork NJ. Bioinformatics. 2008. 24(16):1787-1792. PMID: 18562267.

Prediction of cancer driver mutations in protein kinases. Torkamani A, Schork NJ. Cancer Res. 68(6):1675-1682. 2008. PMID: 18339846.

Congenital disease SNPs target lineage specific structural elements in protein kinases. Torkamani A, Kannan N, Taylor SS, Schork NJ. Proc Natl Acad Sci. 105(26):9011-9016. 2008. PMID: 18579784.

Accurate prediction of deleterious protein kinase polymorphisms. Torkamani A, Schork NJ. Bioinformatics. 23(21):2918-2925. 2008. PMID: 17855419.

Distribution analysis of nonsynonymous polymorphisms within the human kinase gene family. Torkamani, A, Schork, NJ. Genomics. 90(1):49-58. 2007 Jul. PMID: 17498919.