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Genomics 101: A Primer

Key word / concept Slide set Slide #
1000 Genomes Project Pharmacogenomics 17
 
Allele Genotyping 2
 
Cancer    
- Gene pathways Cancer Genomics 28
---- APC/Hedgehog Cancer Genomics 30
---- Apoptosis Cancer Genomics 30
---- Glioma-associated Cancer Genomics 31
---- Hypoxia-inducible factor-1 Cancer Genomics 29
---- PI3K Cancer Genomics 32
---- Receptor tyrosine kinase Cancer Genomics 29
---- Retinoblastoma Cancer Genomics 31
---- SMAD Cancer Genomics 32
- Identifying cancer genes Cancer Genomics 15-18
- Mutations Cancer Genomics  
---- Cancer Gene Census Cancer Genomics 21-22
---- Categories Cancer Genomics 23
---- Gene types    
-------- Proto oncogenes Cancer Genomics 12
-------- Tumor suppressor genes Cancer Genomics 13
-------- Stability/caretaker genes Cancer Genomics 14
---- Inherited    
-------- oncogenes Cancer Genomics 37
-------- tumor suppressor genes Cancer Genomics 34-36
---- Somatic (by pathway) Cancer Genomics 38-41
- Properties of cancer cells Cancer Genomics 6-9
- Types Cancer Genomics 5
---- Breast Cancer Genomics 24
---- Colorectal Cancer Genomics 25
---- Prostate   26
- Validating cancer genes   19
 
Cancer Genome Atlas Pharmacogenomics 18
  Cancer Genomics 20
 
Cells    
- general Basics 2
- somatic cell DNA and Heredity 9
- germline cell DNA and Heredity 9
- stem cell DNA and Heredity 9
 
Chromosomes    
- general DNA and Heredity 2
- abnormalities.    
---- cause Mutations 8-9
---- numerical Mutations 4-5
---- risk factors Mutations 10
---- structural Mutations 4-6
 
DNA    
- composition Basics 3
- markers Genotyping 2
- types,    
---- autosomal DNA and Heredity 4
---- X chromosome DNA and Heredity 5
---- Y chromosome DNA and Heredity 6
---- Mitochondrial DNA and Heredity 7
 
Genes    
- coding Basics 4
- non-coding Basics 4
 
Gene testing    
- available tests Gene Testing 6
- definition Gene Testing 2
- disease prediction Gene Testing 7-8
- ethical concerns Genetics in Society  
- genetic risk Gene Testing 9
- issues Gene Testing 5
- pros & cons Gene Testing 4
- reasons for Gene Testing 3
 
Genetic Legislation    
- Genetic Information Nondiscrimination Act (GINA) Genetics in Society 3-4
- Genomics and Personalized Medicine Act    
- Laboratory Test Improvement Act Genetics in Society 5
- Newborn Screening Saves Lives Act    
  Genetics in Society 6
  Genetics in Society 7
 
Genotype    
- definition Genotyping 4
- assays,    
---- PCR Genotyping 11
---- DNA fragment analysis Genotyping 11
---- Allele-specific probes Genotyping 12
---- DNA sequencing Genotyping 12
---- DNA microarrays/beads Genotyping 13
 
GWAS    
- benefit to public GWAS 5
- definition GWAS 3
- interpretation GWAS 9
- methodology GWAS 7-8
- purpose GWAS 4
- use in disease GWAS 6
 
Haplotype Genotyping 6-8
 
International HapMap Project GWAS 2
 
Meiosis Mutations 8
 
Mitosis Mutations 8
 
Mutation    
- chromosomal abnormalities Mutations 4-6
- types,    
---- deletion Mutations 7
---- duplication Mutations 7
---- inversion Mutations 7
---- translocation Mutations 7
---- rings Mutations 7
 
Omics    
- cascade ‘Omics’ 3
- comprehensive ‘omics’ ‘Omics’ 5
- definitions ‘Omics’ 4
 
Pharmacogenetics Knowledge Base Pharmacogenomics 18
 
Pharmacogenomics    
- application in drug development Pharmacogenomics 8
- ethical concerns Genetics in Society 9-10
- evolution Pharmacogenomics 2-7
- examples,    
---- CYP2C19 Pharmacogenomics 14-15
---- CACNA1C Pharmacogenomics 16
 
Pharmacodynamics Pharmacogenomics 10-11
 
Pharmacokinetics Pharmacogenomics 10-11
 
Proteins    
- structure Basics 5
 
Sequencing    
- exome, targeted Sequencing 10-13
- next-generation methods,    
---- in vitro amplification Sequencing 7
---- parallelized screening Sequencing 7
---- ligation Sequencing 8
---- microfluidic Sanger Sequencing 8
- next next-gen methods,    
---- hybridization Sequencing 9
---- mass spectrometry Sequencing 9
---- other, under development Sequencing 9
- timeline Sequencing 3-5
 
Single nucleotide polymorphisms    
- categories,    
---- causative Mutations 14
---- linked Mutations 14
- definition Mutations 12
- in GWAS GWAS 8
- properties Mutations 13
- use Genotyping 6-9

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